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ezPaycheck after the check feature will work for you. Please view the two options in this following guide.

ezPaycheck payroll: how to enter federal tax manually
https://www.halfpricesof...-fact-payroll-checks.asp 

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If you have further questions, please contact us directly at services@halfpricesoft.com
Small business payroll & tax software solution
http://www.halfpricesoft.com 
I'm using EZPayCheck and I want to set the Federal Income Tax withholding rate to 25% and have the other(FICA,Medicare,etc) remain as the law states.