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Yes, you can enter the amount yourself. ezPaycheck is very flexible.

How to pay employee by commission.
https://www.halfpricesof...ycheck-by-commission.asp 

You can also pay employee by visit, project or others. Learn more at:
https://www.halfpricesof...are/guide_wage_setup.asp 

Thank you,
If you have further questions, please contact us directly at services@halfpricesoft.com
Small business payroll & tax software solution
http://www.halfpricesoft.com 
I am trying to create just a one time check for an employee. I do not want to do it as an hourly payment, and she is not really salary. This is just a commission payment for work she has done. Is there a way to do that? If I do it as salary, I don't want to have to calculate what she should make for the year because that will not be right. The withholdings are off. For our previous program, we could just type in an amount we needed, and run the payroll off of that.