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ezPaycheck can handle paychecks for non resident aliens. Please check this link

Paychecks for non resident alien
http://www.halfpricesoft...ware/payroll-oversea.asp 

If you have generated the paychecks with wrong taxes, you need to delete the checks first. Please follow instructions here
http://www.halfpricesoft...-Edit-Payroll-check.aspx 

Please let us know if you still have any questions.

Thank you.

Casey
halfpricesoft.com

Casey
Please feel free to contact us directly  if you need assistance
Small Business Payroll & Tax Software Solution
https://www.halfpricesoft.com 
I have been using ezpaychecks from last 3 years. I want to run payroll for non resident alien and we will not be paying social security and medicare taxes for them. So how to change the default setting in expaycheck. I am unable to change it as check boxes are freezed. Please advice

Vishali