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Cheyney,

ezPaycheck payroll software is very flexible. If you need to withhold extra tax, please follow the guide below.

How to Withhold Extra Federal And State Income Taxes from Employee Paychecks
http://www.halfpricesoft...onal-amount-withhold.asp 

You can test it easily by adding a paycheck with the extra tax and a paycheck without the extra tax. (You do not need to save the check. You can just review the information on screen).

If you have further questions, please contact us directly at services@halfpricesoft.com
Small business payroll & tax software solution
http://www.halfpricesoft.com 
We are using the ezPayCheck Payroll Software. Our CPA noticed that the additional amounts employees that elected to have withheld from their checks, $10 in each case, isn't actually being withheld in the software.

Thank you,

Cheyney